Welcome to lapa’s documentation!

Feature Overview:

• Quick Start
• LAPA
  • Installation
  • Poly(A) site calling from long-read RNA-seq or 3’-seq
  • TSS calling from long-read RNA-seq
  • Documentation
  • Cite
• Running LAPA with CLI and python
  • Poly(A) cluster calling
  • TSS cluster calling
  • Linking reads
  • Correction of TALON gtf and abundance
• CLI arguments
  • lapa
  • lapa_tss
  • lapa_link_tss_to_tes
  • lapa_correct_talon
• Output format
  • Poly(A) clusters
  • TSS clusters
• Quality Control (QC)
• Statistical testing
  • Fisher’s exact test
  • BetaBinomial test
• API Reference
  • lapa

Indices and tables

• Index