lapa.utils.common
Module Contents
Functions
|
Pad pandas series with zeros at the start ande end. |
Attributes
the list of poly(A) signals |
- lapa.utils.common.polyA_signal_seqs = ['AATAAA', 'ATTAAA', 'TATAAA', 'AGTAAA', 'AATACA', 'CATAAA', 'AATATA', 'GATAAA', 'AATGAA',...
the list of poly(A) signals that are annotated for single 3’ end processing sites in the region -60 to +10 nt around them According to Gruber et al., 2016, Genome Research.
- Type
List[str]
- lapa.utils.common.pad_series(series, pad_size=2)
Pad pandas series with zeros at the start ande end.
- Parameters
series – pd.Series
pad_size – 0